1 |
Baxevanis, A. D. and Bateman, A. (2015). The importance of biological databases in biological discovery. Current Protocols in Bioinformatics, 50(1).
|
|
2 |
Chitwood, J. L., Rincon, G., Kaiser, G. G., Medrano, J. F., and Ross, P. J. (2013). Rna-seq analysis of single bovine blastocysts. BMC Genomics, 14:350.
|
|
3 |
Ca ́novas, A., Rincon, G., Islas-Trejo, A., Wickramasinghe, S., and Medrano, J. F. (2010). Snp discovery in the bovine milk transcriptome using rna-seq technology. Mammalian Genome, 21(11-12):592–598.
|
|
4 |
Danchin, A., Ouzounis, C., Tokuyasu, T., and Zucker, J.-D. (2018). No wisdom in the crowd: genome annotation in the era of big data – current status and future prospects. Microbial Biotechnology, 11(4):588–605.
|
|
5 |
Desai, N., Ploskonka, S., Goodman, L., Austin, C., Goldberg, J., and Falcone, T. (2014). Analysis of embryo morphokinetics, multinucleation and cleavage anomalies using continuous time-lapse monitoring in blastocyst transfer cycles. Reprod Biol En- docrinol, 12:54.
|
|
6 |
Deshpande, D., Chhugani, K., Chang, Y., Karlsberg, A., Loeffler, C., Zhang, J., Muszyn ́ska, A., Munteanu, V., Yang, H., Rotman, J., Tao, L., Balliu, B., Tseng, E., Eskin, E., Zhao, F., Mohammadi, P., P. Łabaj, P., and Mangul, S. (2023). Rna-seq data science: From raw data to effective interpretation. Frontiers in Genetics, 14.
|
|
7 |
Hrdlickova ́,R.,Toloue,M.,andTian,B.(2016). Rna-seqmethodsfortranscriptome analysis: Rna-seq. Wiley Interdisciplinary Reviews: RNA, 8.
|
|
8 |
Lonsdale, J., Thomas, J., Salvatore, M., Phillips, R., Lo, E., Shad, S., Hasz, R., Walters, G., Garcia, F., Young, N., and et al. (2013). The genotype-tissue expression (gtex) project. Nature Genetics, 45(6):580–585.
|
|
9 |
Milazzotto, M. P., Goissis, M. D., Chitwood, J. L., Annes, K., Soares, C. A., Ispada, J., Assumpc ̧a ̃o, M. E. O. , and Ross, P. J. (2016). Early cleavages influence the molecular and the metabolic pattern of individually cultured bovine blastocysts. Mol Reprod Dev., page 54.
|
|
10 |
Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L., and Wold, B. (2008). Mapping and quantifying mammalian transcriptomes by rna-seq. Nature Methods, 5.
|
|
11 |
Perampalam, P. and Dick, F. A. (2020). Beavr: A browser-based tool for the exploration and visualization of rna-seq data. BMC Bioinformatics, 21(1).
|
|
12 |
Ullah, S., Rahman, W., Ullah, F., Ahmad, G., Ijaz, M., and Gao, T. (2022). Dbhr: a collection of databases relevant to human research. Future Science OA, 8(3):FSO780.
|
|
13 |
Villalba, G. C. and Matte, U. (2021). Fantastic databases and where to find them: Web ap- plications for researchers in a rush. Genetics and Molecular Biology, 44(2):e20200203.
|
|
14 |
Xu, G., Strong, M. J., Lacey, M. R., Baribault, C., Flemington, E. K., and Taylor, C. M. (2014). Rna compass: A dual approach for pathogen and host transcriptome analysis of rna-seq datasets. PLoS ONE, 9(2).
|
|